Super excited to share my very first lead-author paper in @ScienceAdvances

Supported by @HIRN_CC @NIDDKgov @UFBME @UFWertheim @ufdiabetes @UMCoEDean
Lead by @Cherie_Stabler & @ashu83

link:
https://t.co/FbqVWQ0n5p

This is a thread 👇

Highlights:
⚪️A Lab-on-a-Chip platform for organoids w/ wide capabilities: long-term culture | controlled & dynamic perifusion | in situ spatio-temporal imaging | serial cell assessment | ease of sample retrieval
⚪️Continuous fluidic flow increased local oxygen supply to islets in hydrogels & reduced cellular hypoxia
⚪️Flow increased cellular viability & reduced apoptosis & cell death
⚪️Human islets in hydrogels were highly functional during the 10 day in situ culture in our chips, while islet function was rapidly lost under static conditions
⚪️Glucolipotoxicity study showed a treatment window as small as 2.5 hours can elevate cell death
What are organoids? – A miniaturized version of an organ that imitate an aspect of human interface. They are commonly developed from stem cells in a lab. Human body also produces organoids naturally particularly within the pancreas.
Think of organoids like a microscopic version of raspberries comprised of small spheres. These raspberry-like organoids in the pancreas are called the islets that manufacture insulin and maintain glucose homeostasis.
Photo: Raspberry | Islet (yellow = insulin & blue = cellular nuclei)
Problem: Culturing organoids traditionally lead to precipitous loss of cell mass & fxn. This is at least due to oxygen deprivation & the lack of nutrient exchange. Tools used to evaluate islet fxn also make it hard to recover cells as they are trapped in a device or a slurry.
Our Solution: Lab-on-a-chip platform
What is this technology? It is a replica of a specific organ interface on a microchip. Our device mimics the dynamic environment of the islet niche by providing a microfluidic flow to islets that are also embedded in a 3D gel.
Our device can allow live-cell imaging to do cool studies.
Here, beta cells within an islet treated with high glucose + lipotoxic agent (left) shows elevated calcium signaling (GCaMP) compared to those treated with basal level of glucose (right) while showing cell death.
Future work: Further investigation on the role of shear stress in maintaining islet function. Expand throughput & in situ functional assessment w/o sacrificing ease in usability. Study temporal interactions between complex matrices and other 3D organoids.
Checkout my personal journey that ultimately produced this research article & what this all means to me through this video🎥🎙️ https://t.co/unEdSYfiw0
This was a highly collaborative effort excellently lead by @Cherie_Stabler & @ashu83. My deepest and most sincere appreciation goes to my co-first author @MattIshahak, mentors @Deborah_Chaimov, @PhelpsLab_UF, Dr. Peter Buchwald (@umiamimedicine) and colleagues…
…Ashwin Velraj, Dan LaShoto, & @walkhagan without whom this work would not have been disseminated.
I want to express my gratitude to the reviewers and the editors @ScienceAdvances for providing insightful criticism that strengthen the impact of this manuscript.
Additionally, I would like to acknowledge the unsung heroes including all my lab members at the Stabler Lab, my partner, and family members. Thank you for your insights, critics, and putting up with my countless MIA hours!
If you are curious about any specifics, please reach out to me directly! Looking forward to your interesting questions.

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I want to share my thoughts, as someone who has been so alarmed by the so-called "dissident" scientists like Gupta, Heneghan, Kuldorff, Bhattacharya, & Ioannidis who consider themselves brave Galileos unfairly treated by "establishment scientists." I will try not to swear. 1/n


I want to talk about 3 things:
‼️Their fringe views are inhumane, unethical junk science that promotes harm
‼️They complain that they've been marginalized but this is simply untrue
‼️I am sick of people telling me we have to "listen to both sides." There aren't 2 sides here 2/n

These 'dissident' scientists have consistently downplayed COVID-19, urging policymakers not to take aggressive control measures. They claim it is not a serious threat. Gupta even went on TV saying people under 65 shouldn't worry about it!

RECEIPTS

They have consistently argued that policymakers should just let the virus rip, in an attempt to reach herd immunity by natural infection. Kuldorff *continues* to argue for this even now that we have many highly effective, safe vaccines.


We've never controlled a deadly, contagious pandemic before by just letting the virus spread, as this approach kills & disables too many people. In Manaus, Brazil, 66% of the city was infected & an astonishing *1 in 500* people died of COVID-19
Daily Bookmarks to GAVNet 01/08/2021

Where antibiotic resistance comes from

https://t.co/CULwpxEVBJ

#antibiotics #resistance #genomes #EvolutionaryHistory

Along with vaccine rollouts, the U.S. needs a National Hi-Fi Mask Initiative

https://t.co/oqInlLSJl2

#PandemicResponse #vaccines #masks #COVID19
It was great to talk about reproducible workflows for @riotscienceclub @riotscience_wlv. You can watch the recording below, but if you don't want to listen to me talk for 40 minutes, I thought I would summarise my talk in a thread:


My inspiration was making open science accessible. I wanted to outline the mistakes I've made along the way so people would feel empowered to give it a go. Increased accountability is seen as a barrier to adopting open science practices as an ECR

It also comes across as all or nothing. You are either fully open science or your research won't get anywhere. However, that can be quite intimidating, so I wanted to emphasise this incremental approach to adapting your workflow

There are two sides to why you should work towards reproducibility. The first is communal. It's going to help the field if you or someone else can reproduce your whole pipeline.


There is also the selfish element of it's just going to help you do your work. If you can't remember what your work means after a lunch break, you're not going to remember months or years down the line

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