This is a thread on statistics in science: 1/7 (via @LogicofScience)

Basic
Statistics Part 1: The Law of Large Numbers https://t.co/wUH8eAAIak

#Science #Statistics

Basic Statistics Part 2: Correlation vs. Causation

https://t.co/Azhyl8pDsX (2/7)
Basic Statistics Part 3: The Dangers of Large Data Sets: A Tale of P values, Error Rates, and Bonferroni Corrections

https://t.co/LetN6aEBRM (3/7)
Basic statistics part 4: understanding P values

https://t.co/K8MMMgTCOf (4/7)
Basic Statistics Part 5: Means vs Medians, Is the “Average” Reliable?

https://t.co/xDdsknlZyt
(5/7)
Basic Statistics Part 6: Confounding Factors and Experimental Design

https://t.co/yGxTh2HPf9 (6/7)
When can correlation equal causation?

https://t.co/Vl3JmC8NMe (7/7)
While you are here, also have a look at this thread on rules of logic:

https://t.co/OtVrL0nyIl
Thanks for your patience.

May be mark this thread too for reading later? One on logical fallacies: https://t.co/Z7S9kNsFoI

-End-

More from Science

"NO LONGER BEST IN THE WORLD"
UNEP's new Human Development Index includes a new (separate) index: Planetary pressures-adjusted HDI (PHDI). News in Norway is that its position drops from #1 to #16 because of this, while Ireland rises from #2 to #1.
Why?

https://t.co/aVraIEzRfh


Check out Norway's 'Domestic Material Consumption'. Fossil fuels are no different here to Ireland's. What's different is this huge 'non-metallic minerals' category.
(Note also the jump in 1998, suggesting data problems.)
https://t.co/5QvzONbqmN


In Norway's case, it looks like the apparent consumption equation (production+imports-exports) for non-metal minerals is dominated by production: extraction of material in Norway.
https://t.co/5QvzONbqmN


And here we see that this production of non-metallic minerals is sand, gravel and crushed rock for construction. So it's about Norway's geology.
https://t.co/y6rqWmFVWc


Norway drops 15 places on the PHDI list not because of its CO₂ emissions (fairly high at 41st highest in the world per capita), but because of its geology, because it shifts a lot of rock whenever it builds anything.
Hard agree. And if this is useful, let me share something that often gets omitted (not by @kakape).

Variants always emerge, & are not good or bad, but expected. The challenge is figuring out which variants are bad, and that can't be done with sequence alone.


You can't just look at a sequence and say, "Aha! A mutation in spike. This must be more transmissible or can evade antibody neutralization." Sure, we can use computational models to try and predict the functional consequence of a given mutation, but models are often wrong.

The virus acquires mutations randomly every time it replicates. Many mutations don't change the virus at all. Others may change it in a way that have no consequences for human transmission or disease. But you can't tell just looking at sequence alone.

In order to determine the functional impact of a mutation, you need to actually do experiments. You can look at some effects in cell culture, but to address questions relating to transmission or disease, you have to use animal models.

The reason people were concerned initially about B.1.1.7 is because of epidemiological evidence showing that it rapidly became dominant in one area. More rapidly that could be explained unless it had some kind of advantage that allowed it to outcompete other circulating variants.

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