The sample's BAM will show up for viewing in IGV.
Once open, you can use the jump link to move swiftly around to each variant. This is a variant in THCAS.
https://t.co/LjpdlHa0C7 is getting a good face-lift.
Samples now have variant tables with annotation on their impact to the gene.
There is also an IGV integration. You need IGV installed locally but the Start|Jump links will open up you BAM file in IGV.
The sample's BAM will show up for viewing in IGV.
Once open, you can use the jump link to move swiftly around to each variant. This is a variant in THCAS.
How about flowering genes?
This sample has a disruptive in frame deletion on a late flowering gene. And it's very rare in the population.
But its never this simple in cannabis.
Let's look at what other damaging variations it has.
It is not just a simple presence or absence of the cannabinoid synthase genes. One has to pay close attention to variants up stream in the pathway as well.
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